PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G068400.4
Common NameB456_009G068400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 238aa    MW: 27065.4 Da    PI: 4.63
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G068400.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-056892123
                        EEETTTTEEESSHHHHHHHHHH..T CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirt..H 23
                        y+C+ Cgk ++++  + +H+++  H
  Gorai.009G068400.4 68 YSCGVCGKGYRSSKAYSQHLKSraH 92
                        99******************98666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.5E-6336No hitNo description
SMARTSM0035554428IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280628IPR007087Zinc finger, C2H2
SuperFamilySSF576673.63E-667104No hitNo description
PfamPF121715.6E-56892IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS501579.7436897IPR007087Zinc finger, C2H2
SMARTSM003550.196892IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807092IPR007087Zinc finger, C2H2
SuperFamilySSF576676.66E-10168235No hitNo description
PfamPF127564.9E-10182235IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MPGLTCNACN KEFLDDADQK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QSALAQEKEK  60
QNETPMLYSC GVCGKGYRSS KAYSQHLKSR AHIMQASQGT NHPQEVKAII KPLPRRTVNK  120
PPQPRDRNDD ESQDEWEEVD PEEELVGQAA NSLTHLNVTE DGAGDEMEEE EEEEEELDPC  180
CCFMCDLEHD TIESCMVHMH KLHGFFIPDV EYLKDPEGLL TYLGLKVPKL YICFCFD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012443253.11e-154PREDICTED: zinc finger protein 622-like
RefseqXP_012443252.11e-154PREDICTED: zinc finger protein 622-like
SwissprotQ8H1G51e-106REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBLA0A0D2RVE51e-179A0A0D2RVE5_G
STRINGGLYMA11G17941.11e-112(Glycine max)
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]